A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.
SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).
SILVA are the official databases of the software package ARB.
For more background information
Click here
The software package ARB represents a graphically-oriented, fully-integrated package of cooperating software tools for handling and analysis of sequence information.
The ARB project has been started more than 15 years ago by Wolfgang Ludwig at the Technical University in Munich, Germany, see
www.arb-home.de.
Visit our partner site
www.megx.net, the data portal for Marine Ecological Genomix, to get a feeling how your research can be improved using integrated databases.
Pruesse, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies, and F. O. Glöckner. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nuc. Acids Res. 2007; Vol. 35, No. 21, p. 7188-7196
SILVA uses a dual licensing model. In short, browsing and deploying the SILVA database content displayed on the SILVA webportal is free for all (academic and non-academic users) whereas all downloads are only free for academic users. Both, academic and non-academic users should have a look at the
SILVA Terms of Use/License Information for more details.
After quite a long time here is the first pre-release information for SILVA release 111.
The SINA (SILVA INcremental Aligner) paper has just been published in the journal Bioinformatics.
As published in the last issue of Laborjournal SILVA is one of the most cited papers in the last years. A big "Thank You" to all of you. It is a pleasure to work with such a great community. The SILVA Team.
SILVA release 110 skipped. Preparing now for EMBL release 111. Sorry for any inconveniences. The SILVA Team.
| SSU Parc | SSU Ref | LSU Parc | LSU Ref | |||
|---|---|---|---|---|---|---|
| Minimal length | 300 | 1200/900 | 300 | 1900 | ||
| Quality filtering | basic | strong | basic | strong | ||
| Guide Tree | no | yes | no | yes | ||
| Release version | 108 | 108 | 108 | 108 | ||
| Release date | 01.09.11 | 01.09.11 | 01.09.11 | 01.09.11 | ||
| Aligned rRNA sequences | 2,492,653 | 618,442 | 269,240 | 23,600 |
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